PROJECT NAME
GOLD Project ID
Gp0050991  
Project Name
Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Methane enrichment  
Other Names
  
Legacy ER Sample ID
10021  
Legacy GOLD ID
Gs0000203  
NCBI BioProject Name
  
NCBI BioProject ID 30129
NCBI BioProject Accession
  
NCBI Locus Tag
  
NCBI BioSample Accession
  
PI Lumila Chistoserdova
Added By Nikos Kyrpides on 2007-12-04 00:00:00.0
Last Modified By Michelle Isbandi on 2014-08-04 00:00:00.0
Project Comments
3-5 day incubation wtih 50:50 air:13C-labeled methane; enzyme/detergent lysis, pheno extraction and isopropanol precipitation,; 13C-labeld DNA isolated by CsCl purification.   
PROJECT TYPE
Specimen Biome
Nucleic Acid
  
Sequencing Strategy
Metagenome  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Washington (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nature biotechnology 26(9):1029-34 High-resolution metagenomics targets specific functional types in complex microbial communities.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Sediment methylotrophic communities from Lake Washington, Seattle, Washington, USA
Biosamples Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Methane enrichment
Analysis Projects Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Methane enrichment
Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Combined assembly reannotation Gp0050987, Gp0050988, Gp0050989, Gp0050990, Gp0050991
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Methane enrichment
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Sediment  

 

 

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