PROJECT INFORMATION
GOLD Project ID
Gp0048920  
Project Name
Planktothrix rubescens NIVA-CYA 407  
Other Names
  
Legacy ER Project ID
55822  
Legacy GOLD ID
Gi0055822  
NCBI BioProject Name Planktothrix rubescens NIVA-CYA 407
NCBI BioProject ID 212880
NCBI BioProject Accession PRJNA212880
NCBI Locus Tag
N313  
NCBI BioSample Accession SAMN02261512
PI
Added By JGI automated process on 2013-10-11
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center University of Oslo (Norway)
Norwegian Sequencing Centre (NSC) (Norway)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX332212  (Link to NCBI )
Experiment Title Genome sequening of Planktothrix rubescens var. NIVA-CYA 407
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NC407_SG
Library Layout SINGLE
Library Instrument 454 GS FLX
Spot Length 0
 
SRA Experiment Id SRX332214  (Link to NCBI )
Experiment Title genome sequencing of Planktothrix rubescens var. NIVA-CYA 407
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name NC407_PE8kb
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
Spot Length 0
PROJECT COMPOSITION
Study Planktothrix rubescens NIVA-CYA 407 Genome sequencing
Organism Planktothrix rubescens NIVA-CYA 407
Analysis Projects Planktothrix rubescens NIVA-CYA 407
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0048920
Organism Name
Planktothrix rubescens NIVA-CYA 407  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Planktothrix  
Genus Synonyms
  
Species
Planktothrix rubescens  
Subspecies
  
Species Synonyms
  
Strain
NIVA-CYA 407  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1255374
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Oscillatoriales  
NCBI Family
Microcoleaceae  
NCBI Genus
Planktothrix  
NCBI Species
Planktothrix rubescens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?