PROJECT NAME
GOLD Project ID
Gp0046991  
Project Name
Clostridium lundense DSM 17049  
Other Names
  
Legacy ER Project ID
54456  
Legacy GOLD ID
Gi0054456  
NCBI BioProject Name Clostridium lundense DSM 17049
NCBI BioProject ID 223468
NCBI BioProject Accession
PRJNA223468  
NCBI Locus Tag
T514  
NCBI BioSample Accession
SAMN02952982  
PI William Kelly
Added By JGI automated process on 2013-09-06
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.
Analysis Projects Clostridium lundense DSM 17049
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
29  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0046991
Organism Name
Clostridium lundense DSM 17049  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium lundense  
Subspecies
  
Species Synonyms
  
Strain
DSM 17049  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 17049  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9932  
Exemplar Name
Clostridium lundense DSM 17049  
Taxon DOI
10.1601/tx.9932  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1410653
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium lundense  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic extracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Bos taurus  
Symbiont Taxon ID
9913  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Rumen
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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