PROJECT INFORMATION
GOLD Project ID
Gp0041945  
Project Name
Porticoccus hydrocarbonoclasticus MCTG13d  
Other Names
  
Legacy ER Project ID
47899  
Legacy GOLD ID
Gi0047899  
NCBI BioProject Name Porticoccus hydrocarbonoclasticus MCTG13d
NCBI BioProject ID 225848
NCBI BioProject Accession PRJNA225848
NCBI Locus Tag
U740  
NCBI BioSample Accession SAMN02744760
PI William Whitman
Added By JGI automated process on 2013-05-14
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Whole Genome Sequencing of Novel Marine Hydrocarbon-Degrading Bacteria  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Genome announcements Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1880903  (Link to NCBI )
Experiment Title Porticoccus hydrocarbonoclasticus MCTG13d
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PGHX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1880902  (Link to NCBI )
Experiment Title Porticoccus hydrocarbonoclasticus MCTG13d
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PGHX
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Whole Genome Sequencing of Novel Marine Hydrocarbon-Degrading Bacteria
Organism Porticoccus hydrocarbonoclasticus MCTG13d
Analysis Projects Porticoccus hydrocarbonoclasticus MCTG13d
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
189,901 PacBio  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0041945
Organism Name
Porticoccus hydrocarbonoclasticus MCTG13d  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Porticoccus  
Genus Synonyms
  
Species
Porticoccus hydrocarbonoclasticus  
Subspecies
  
Species Synonyms
  
Strain
MCTG13d  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1415778
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Cellvibrionales  
NCBI Family
Porticoccaceae  
NCBI Genus
Porticoccus  
NCBI Species
Porticoccus hydrocarbonoclasticus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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