PROJECT INFORMATION
GOLD Project ID
Gp0037124  
Project Name
Candidatus Microthrix parvicella Bio17-1  
Other Names
  
Legacy ER Project ID
43168  
Legacy GOLD ID
Gi0043168  
NCBI BioProject Name Candidatus Microthrix parvicella Bio17-1
NCBI BioProject ID 174686
NCBI BioProject Accession PRJNA174686
NCBI Locus Tag
MPARV  
NCBI BioSample Accession SAMN01730125
PI
Added By JGI automated process on 2013-04-02
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Industrial
Sequencing Center University of Luxembourg
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX189748  (Link to NCBI )
Experiment Title Candidatus Microthrix parvicella genome sequencing - Paired End library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER
Spot Length 202
 
SRA Experiment Id SRX189749  (Link to NCBI )
Experiment Title Candidatus Microthrix parvicella genome sequencing - Mated Pairs library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER
Spot Length 202
PROJECT COMPOSITION
Study Candidatus Microthrix parvicella Bio17-1 Genome Sequencing
Organism Candidatus Microthrix parvicella Bio17-1
Analysis Projects Candidatus Microthrix parvicella Bio17-1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
PacBio RS
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
66  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0037124
Organism Name
Candidatus Microthrix parvicella Bio17-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
  
Genus Synonyms
  
Species
Candidatus Microthrix parvicella Bio17-1  
Subspecies
  
Species Synonyms
  
Strain
Bio17-1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1231054
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Acidimicrobiia  
NCBI Order
Acidimicrobiales  
NCBI Family
Microthrixaceae  
NCBI Genus
Candidatus Microthrix  
NCBI Species
Candidatus Microthrix parvicella  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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