PROJECT NAME
GOLD Project ID
Gp0036634  
Project Name
Clostridium algidicarnis B3  
Other Names
  
Legacy ER Project ID
42735  
Legacy GOLD ID
Gi0042735  
NCBI BioProject Name Clostridium algidicarnis strain:B3
NCBI BioProject ID 239120
NCBI BioProject Accession
PRJNA239120  
NCBI Locus Tag
BV55  
NCBI BioSample Accession
SAMN02841231  
PI William Kelly
Added By JGI automated process on 2013-03-26
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
  
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.
Analysis Projects Clostridium algidicarnis B3
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
PacBio RS
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular LMP, 8kb, CLRS; Illumina Regular Fragment, 270bp; PacBio 10kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
30  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0036634
Organism Name
Clostridium algidicarnis B3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium algidicarnis  
Subspecies
  
Species Synonyms
  
Strain
B3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 37659
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium algidicarnis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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