PROJECT INFORMATION
GOLD Project ID
Gp0035621  
Project Name
Methylomarinum vadi IT-4  
Other Names
  
Legacy ER Project ID
40668  
Legacy GOLD ID
Gi38894  
NCBI BioProject Name Methylomarinum vadi strain:IT-4
NCBI BioProject ID 246204
NCBI BioProject Accession PRJNA246204
NCBI Locus Tag
EP25  
NCBI BioSample Accession SAMN02745036
PI marina kalyuzhnaya
Added By JGI automated process on 2013-02-08
Last Modified By JGI automated process on 2020-08-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Comparative analysis
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Revising methanotrophy: a comprehensive genomic probing of the unexpected genetic and metabolic diversity of aerobic methane consuming bacteria.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1904181  (Link to NCBI )
Experiment Title Methylomarinum vadi IT-4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXU
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1904180  (Link to NCBI )
Experiment Title Methylomarinum vadi IT-4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXU
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1904182  (Link to NCBI )
Experiment Title Methylomarinum vadi IT-4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXU
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1904179  (Link to NCBI )
Experiment Title Methylomarinum vadi IT-4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXU
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Revising methanotrophy: a comprehensive genomic probing of the unexpected genetic and metabolic diversity of aerobic methane consuming bacteria.
Organism Methylomarinum vadi IT-4
Analysis Projects Methylomarinum vadi IT-4
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
4335162  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0035621
Organism Name
Methylomarinum vadi IT-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Methylomarinum  
Genus Synonyms
  
Species
Methylomarinum vadi  
Subspecies
  
Species Synonyms
  
Strain
IT-4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 13665  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23906  
Exemplar Name
Methylomarinum vadi  
Taxon DOI
10.1601/tx.23906  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 438855
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Methylococcales  
NCBI Family
Methylococcaceae  
NCBI Genus
Methylomarinum  
NCBI Species
Methylomarinum vadi  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Hydrothermal sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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