PROJECT INFORMATION
GOLD Project ID
Gp0035218  
Project Name
Prochloron didemni P3-Solomon  
Other Names
  
Legacy ER Project ID
40142  
Legacy GOLD ID
Gi23701  
NCBI BioProject Name Prochloron didemni P3-Solomon
NCBI BioProject Accession PRJNA82335
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02954251
PI
Added By JGI automated process on 2013-01-22
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Maryland School of Medicine (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Freshly collected samples from the ascidian Lissoclinum patella were squeezed to release bacterial cells, predominantly belonging to the cyanobacterial symbiont Prochloron didemni. DNA was immediately processed and the isolated DNA combined with total DNA isolated from the whole L. patella sample (1:1 mass ratio).  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 108(51):E1423-32 Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Prochloron didemni P2-P4
Organism Prochloron didemni P3-Solomon
Analysis Projects Prochloron didemni P3-Solomon
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0035218
Organism Name
Prochloron didemni P3-Solomon  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Prochloron  
Genus Synonyms
  
Species
Prochloron didemni  
Subspecies
  
Species Synonyms
  
Strain
P3-Solomon  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 910458
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Synechococcales  
NCBI Family
Prochloraceae  
NCBI Genus
Prochloron  
NCBI Species
Prochloron didemni  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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