Studies
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52,218 |
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Biosamples
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170,232 |
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Sequencing Projects
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472,697 |
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Analysis Projects
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360,407 |
| Organisms | 460,470 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0035218
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Project Name
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Prochloron didemni P3-Solomon
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Other Names
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Legacy ER Project ID
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40142
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Legacy GOLD ID
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Gi23701
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| NCBI BioProject Name | Prochloron didemni P3-Solomon |
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NCBI BioProject Accession
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PRJNA82335 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN02954251 |
| PI | |
| Added By |
JGI automated process
on 2013-01-22 |
| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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University of Maryland School of Medicine
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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Freshly collected samples from the ascidian Lissoclinum patella were squeezed to release bacterial cells, predominantly belonging to the cyanobacterial symbiont Prochloron didemni. DNA was immediately processed and the isolated DNA combined with total DNA isolated from the whole L. patella sample (1:1 mass ratio).
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Proceedings of the National Academy of Sciences of the United States of America
108(51):E1423-32
Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis.
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Prochloron didemni P2-P4 |
| Organism |
Prochloron didemni P3-Solomon |
| Analysis Projects |
Prochloron didemni P3-Solomon |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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454 GS FLX |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
42
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0035218 |
| Organism Name |
Prochloron didemni P3-Solomon
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
CYANOBACTERIA
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| Genus |
Prochloron
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| Genus Synonyms |
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| Species |
Prochloron didemni
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| Subspecies |
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| Species Synonyms |
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| Strain |
P3-Solomon
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
910458 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Cyanobacteria
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| NCBI Class |
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| NCBI Order |
Synechococcales
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| NCBI Family |
Prochloraceae
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| NCBI Genus |
Prochloron
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| NCBI Species |
Prochloron didemni
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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