PROJECT INFORMATION
GOLD Project ID
Gp0034379  
Project Name
Lactobacillus ruminis ATCC 27782  
Other Names
  
Legacy ER Project ID
39747  
Legacy GOLD ID
Gi23439, Gc02480  
NCBI BioProject Name Lactobacillus ruminis
NCBI BioProject ID 70721
NCBI BioProject Accession PRJNA70721
NCBI Locus Tag
LRC  
NCBI BioSample Accession
PI Paul O'Toole
Added By JGI automated process on 2013-01-15
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Lactic acid production
Sequencing Center University College Cork (Ireland)
Collaborating Institute
  
Funding Agency
  
Project Description
The genome of Lactobacillus ruminis ATCC 27782 provides a comparative tool for directing functional analyses of other members of the L. salivarius clade, and it increase understanding of the diversity of this distinct Lactobacillus lineage from other commensal lactobacilli. The genome sequence provides a definitive resource to facilitate investigation of the genetics, biochemistry and host intetractions of these motile intestinal lactobacilli.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Microbial cell factories 10 Suppl 1(S13):S13 Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts.
Other Publications
  
PROJECT COMPOSITION
Study Lactobacillus ruminis ATCC 27782
Analysis Projects Lactobacillus ruminis ATCC 27782
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0034379
Organism Name
Lactobacillus ruminis ATCC 27782  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
Lactobacillus ruminis  
Subspecies
  
Species Synonyms
  
Strain
ATCC 27782  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 27782  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1069534
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactobacillus  
NCBI Species
Lactobacillus ruminis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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