PROJECT INFORMATION
GOLD Project ID
Gp0033530  
Project Name
Caenispirillum salinarum AK4  
Other Names
  
Legacy ER Project ID
38577  
Legacy GOLD ID
Gi21826  
NCBI BioProject Name Caenispirillum salinarum AK4
NCBI BioProject Accession PRJNA176164
NCBI Locus Tag
C882  
NCBI BioSample Accession SAMN01840338
PI
Added By JGI automated process on 2012-11-08
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center Institute of Microbial Technology (IMTECH), Council of Scientific and Industrial Research (CSIR) (India)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing Assembly and Annotation of Caenispirillum salinarum.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Genome announcements Draft Genome Sequence of an Alphaproteobacterium, Caenispirillum salinarum AK4(T), Isolated from a Solar Saltern.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX212269  (Link to NCBI )
Experiment Title Caenispirillum salinarum AK4 Paired Reads with Illumina HiSeq1000
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection PCR
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_1000
Spot Length 202
PROJECT COMPOSITION
Study Caenispirillum salinarum AK4
Organism Caenispirillum salinarum AK4
Analysis Projects Caenispirillum salinarum AK4
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0033530
Organism Name
Caenispirillum salinarum AK4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Caenispirillum  
Genus Synonyms
  
Species
Caenispirillum salinarum  
Subspecies
  
Species Synonyms
  
Strain
AK4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 17360  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23191  
Exemplar Name
Caenispirillum salinarum  
Taxon DOI
10.1601/tx.23191  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1238182
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodospirillales  
NCBI Family
Rhodospirillaceae  
NCBI Genus
Caenispirillum  
NCBI Species
Caenispirillum salinarum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Salt crystallizer ponds  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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