PROJECT NAME
GOLD Project ID
Gp0033396  
Project Name
Escherichia coli O145:H28 RM12581  
Other Names
  
Legacy ER Project ID
38285  
Legacy GOLD ID
Gi21534  
NCBI BioProject Name Escherichia coli O145:H28 str. RM12581
NCBI BioProject ID 178647
NCBI BioProject Accession
PRJNA178647  
NCBI Locus Tag
ECRM12581  
NCBI BioSample Accession
  
PI
Added By Michelle Qiu on 2012-11-08
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center U.S. Department of Agriculture, Agricultural Research Service, Western Regional Research Center (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Recently there has been an increase in outbreaks associated with non-O157 Shiga-toxin producing Escherichia coli (STEC), most commonly associated with the serotypes O26, O45, O103, O111, O121, and O145. Escherichia coli O145:H28 strain RM12581 was originally isolated from bagged romaine lettuce. It was linked to the 2010 multi-state outbreak of E. coli O145 infection associated with consumption of shredded romaine lettuce in US.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Escherichia coli O145:H28 RM12581
Analysis Projects Escherichia coli O145:H28 RM12581
Escherichia coli O145:H28 RM12581
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0033396
Organism Name
Escherichia coli O145:H28 RM12581  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
Escherichia coli  
Subspecies
  
Species Synonyms
  
Strain
O145:H28 RM12581  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1248823
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia coli  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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