PROJECT INFORMATION
GOLD Project ID
Gp0033057  
Project Name
Dothidea sambuci CBS 198.58  
Other Names
  
Legacy ER Project ID
37409  
Legacy GOLD ID
Gi38947  
NCBI BioProject Name Dothidea sambuci CBS 198.58
NCBI BioProject ID 346775
NCBI BioProject Accession PRJNA346775
NCBI Locus Tag
BJ645  
NCBI BioSample Accession SAMN05921084
PI Joseph Spatafora
Added By JGI automated process on 2012-11-01
Last Modified By JGI automated process on 2019-09-16
Project Comments
  
Project Status
targeted  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study 1000 Fungal Genomes
Organism Dothidea sambuci CBS 198.58
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Awaiting Sample
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio Sequel II
Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
PacBio Sequel
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes; PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0033057
Organism Name
Dothidea sambuci CBS 198.58  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Dothidea  
Genus Synonyms
  
Species
Dothidea sambuci  
Subspecies
  
Species Synonyms
  
Strain
CBS 198.58  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CBS 198.58  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 162394
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Dothideomycetes  
NCBI Order
Dothideales  
NCBI Family
Dothideaceae  
NCBI Genus
Dothidea  
NCBI Species
Dothidea sambuci  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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