PROJECT INFORMATION
GOLD Project ID
Gp0032982  
Project Name
Dechloromonas agitata is5  
Other Names
  
Legacy ER Project ID
37321  
Legacy GOLD ID
Gi22508  
NCBI BioProject Name Dechloromonas agitata is5
NCBI BioProject ID 195888
NCBI BioProject Accession PRJNA195888
NCBI Locus Tag
K420  
NCBI BioSample Accession SAMN02584944
PI Eric Roden
Added By JGI automated process on 2012-11-01
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Iron redox cycling genomes from the Hanford subsurface  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX872033
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NHPY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX872034
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name NASN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Iron redox cycling genomes from the Hanford subsurface
Organism Dechloromonas agitata is5
Analysis Projects Dechloromonas agitata is5
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0032982
Organism Name
Dechloromonas agitata is5  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Dechloromonas  
Genus Synonyms
  
Species
Dechloromonas agitata  
Subspecies
  
Species Synonyms
  
Strain
is5  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1304883
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Rhodocyclales  
NCBI Family
Azonexaceae  
NCBI Genus
Dechloromonas  
NCBI Species
Dechloromonas agitata  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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