PROJECT INFORMATION
GOLD Project ID
Gp0032275  
Project Name
Lacticaseibacillus rhamnosus L35  
Other Names
  
Legacy ER Project ID
36905  
Legacy GOLD ID
Gi0036905  
NCBI BioProject Name Lacticaseibacillus rhamnosus L35
NCBI BioProject Accession PRJNA217082
NCBI Locus Tag
P058  
NCBI BioSample Accession SAMN02324556
PI prapaporn boonma
Added By prapaporn boonma on 2012-10-22
Last Modified By Supratim Mukherjee on 2020-10-28
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Baylor College of Medicine
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Standards in genomic sciences 9(3):744-54 Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX374122  (Link to NCBI )
Experiment Title 454 XLR Sequencing of Lactobacillus rhamnosus L35 LRHA.L35 Paired-End Library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 4WG_PBU3JV.L35-1_1mA
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX339987  (Link to NCBI )
Experiment Title Lactobacillus rhamnosus L35
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection HMPR
Library Layout PAIRED
Library Instrument 454 GS FLX
PROJECT COMPOSITION
Study Lactobacillus rhamnosus L31-L35 genome sequencing
Organism Lacticaseibacillus rhamnosus L35
Analysis Projects Lacticaseibacillus rhamnosus L35
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0032275
Organism Name
Lacticaseibacillus rhamnosus L35  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lacticaseibacillus  
Genus Synonyms
  
Species
Lacticaseibacillus rhamnosus  
Subspecies
  
Species Synonyms
  
Strain
L35  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1390383
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lacticaseibacillus  
NCBI Species
Lacticaseibacillus rhamnosus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Human fecal
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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