Studies
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56,011 |
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Biosamples
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183,990 |
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Sequencing Projects
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508,073 |
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Analysis Projects
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381,503 |
| Organisms | 480,513 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0032062
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Project Name
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Lachnoclostridium indolis DSM 755
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Other Names
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Legacy ER Project ID
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37036
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Legacy GOLD ID
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Gi22434
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| NCBI BioProject Name | [Clostridium] indolis DSM 755 | ||||||||||||||||||||||||||||||||
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NCBI BioProject Accession
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PRJNA195868 |
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NCBI Locus Tag
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K401
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NCBI BioSample Accession
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SAMN02597187 |
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Source Sample ID
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| PI | Susan B. Leschine | ||||||||||||||||||||||||||||||||
| Added By | JGI automated process on 2012-10-31 | ||||||||||||||||||||||||||||||||
| Last Modified By | JGI automated process on 2023-01-23 | ||||||||||||||||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Understudied soil microbes with underappreciated capabilities: Untangling the Clostridium saccharolyticum group
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||
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JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60000539 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||||||||||||||||
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Genome Publications
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Standards in genomic sciences: 9(3):1089-104 The complete genome sequence of Clostridium indolis DSM 755(T.). PubMed: 25197485 DOI: 10.4056/sigs.5281010 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||
| Study |
Understudied soil microbes with underappreciated capabilities: Untangling the Clostridium saccharolyticum group |
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| Organism |
Lachnoclostridium indolis DSM 755 |
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| Analysis Projects |
Lachnoclostridium indolis DSM 755 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
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Finishing Goal
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Level 3: Improved-High-Quality Draft |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
45
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0032062 |
| Organism Name |
Lachnoclostridium indolis DSM 755
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| Other names (alias, synonyms, short names, common names) |
Clostridium indolis DSM 755
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| Organism Domain |
BACTERIAL
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| Phylogeny |
FIRMICUTES
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| Genus |
Lachnoclostridium
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| Genus Synonyms |
Clostridium
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| Species |
Lachnoclostridium indolis
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 755
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 755
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.3952
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| Exemplar Name |
Lacrimispora indolis
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| Taxon DOI |
10.1601/tx.36014
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| Biosafety Level |
1
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1304881 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Firmicutes
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| NCBI Class |
Clostridia
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| NCBI Order |
Eubacteriales
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| NCBI Family |
Lachnospiraceae
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| NCBI Genus |
Lacrimispora
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| NCBI Species |
Lacrimispora indolis
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Terrestrial
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| Ecosystem Type |
Soil
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Soil |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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