PROJECT INFORMATION
GOLD Project ID
Gp0026274  
Project Name
Geobacter pickeringii G13  
Other Names
  
Legacy ER Project ID
34722  
Legacy GOLD ID
Gpto34722, Gi0034722  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
Gpk  
NCBI BioSample Accession
PI Jonathan Badalamenti
Added By JGI automated process on 2012-10-16
Last Modified By Jonathan Badalamenti on 2015-03-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Mayo Clinic
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Geobacter pickeringii G13, DSM 17153
Organism Geobacter pickeringii G13
Analysis Projects Geobacter pickeringii G13
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
PacBio 20kb library size selected with BluePippin  
Number Of Reads
2014612  
Read Size
5018  
Vector
  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0026274
Organism Name
Geobacter pickeringii G13  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Geobacter  
Genus Synonyms
  
Species
Geobacter pickeringii  
Subspecies
  
Species Synonyms
  
Strain
G13  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 17153  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10738  
Exemplar Name
Geobacter pickeringii  
Taxon DOI
10.1601/tx.10738  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 345632
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Geobacteraceae  
NCBI Genus
Geobacter  
NCBI Species
Geobacter pickeringii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID DQ145535
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
Stenohaline  
pH
  
Cell Diameter
  
Cell Length
  
Color
Pink  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms Acetate oxidizer
Metal reducer
Phenotypes Acetic-acid
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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