PROJECT INFORMATION
GOLD Project ID
Gp0025954  
Project Name
Candidatus Nitrosopumilus sediminis AR2  
Other Names
  
Legacy ER Project ID
29217  
Legacy GOLD ID
Gi21151, Gc02336  
NCBI BioProject Name Candidatus Nitrosopumilus sediminis strain:AR2
NCBI BioProject ID 174388
NCBI BioProject Accession PRJNA174388
NCBI Locus Tag
NSED  
NCBI BioSample Accession SAMN02603138
PI Park,S.-J.
Added By JGI automated process on 2012-09-12
Last Modified By Alejandro Rodriguez Mojica on 2018-07-12
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Chungbuk National University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Draft genome sequence of the ammonia-oxidizing archaeon  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(24):6948-9 Draft genome sequence of an ammonia-oxidizing archaeon, Candidatus Nitrosopumilus sediminis AR2, from Svalbard in the Arctic Circle.
Other Publications
  
PROJECT COMPOSITION
Study Candidatus Nitrosopumilus sediminis AR2
Analysis Projects Candidatus Nitrosopumilus sediminis AR2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0025954
Organism Name
Candidatus Nitrosopumilus sediminis AR2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
THAUMARCHAEOTA  
Genus
  
Genus Synonyms
  
Species
Candidatus Nitrosopumilus sediminis AR2  
Subspecies
  
Species Synonyms
  
Strain
AR2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1229909
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Thaumarchaeota  
NCBI Class
  
NCBI Order
Nitrosopumilales  
NCBI Family
Nitrosopumilaceae  
NCBI Genus
Nitrosopumilus  
NCBI Species
Candidatus Nitrosopumilus sediminis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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