PROJECT NAME
GOLD Project ID
Gp0021532  
Project Name
Pseudomonas stutzeri TS44  
Other Names
  
Legacy ER Project ID
25548  
Legacy GOLD ID
Gi17721  
NCBI BioProject Name Pseudomonas stutzeri TS44
NCBI BioProject ID 162447
NCBI BioProject Accession
PRJNA162447  
NCBI Locus Tag
YO5  
NCBI BioSample Accession
SAMN02469903  
PI
Added By JGI automated process on 2012-05-18
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Huazhong Agricultural University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
The genome sequencing project for Pseudomonas stutzeri TS44 mainly focus on the regulation mechanism of its arsenite oxidation and potential application in industrial production of compatible solutes ectoine. Pseudomonas stutzeri TS44 is a moderately halotolerant arsenite-oxidizing bacterium, isolated from a highly arsenic-contaminated soil of metal (gold, copper,iron) mines in Huangshi City, Hubei Province, central China.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(16):4473-4 Genome sequence of the moderately halotolerant, arsenite-oxidizing bacterium Pseudomonas stutzeri TS44.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Pseudomonas stutzeri TS44
Analysis Projects Pseudomonas stutzeri TS44
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0021532
Organism Name
Pseudomonas stutzeri TS44  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas stutzeri  
Subspecies
  
Species Synonyms
  
Strain
TS44  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 477228
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas stutzeri  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms Arsenite oxidizer
Phenotypes
  
Energy Sources Heterotroph

 

 

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