PROJECT INFORMATION
GOLD Project ID
Gp0020472  
Project Name
Planktothrix prolifica NIVA-CYA 540  
Other Names
  
Legacy ER Project ID
9945  
Legacy GOLD ID
Gi0009945  
NCBI BioProject Name Planktothrix prolifica NIVA-CYA 540
NCBI BioProject ID 212884
NCBI BioProject Accession PRJNA212884
NCBI Locus Tag
N317  
NCBI BioSample Accession SAMN02261502
PI Ave Tooming-Klunderud
Added By Ave Tooming-Klunderud on 2012-04-16
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center University of Oslo (Norway)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Applied and environmental microbiology 79(21):6803-12 From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX332234  (Link to NCBI )
Experiment Title genome sequencing Planktothrix prolifica NIVA-CYA 540
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name NC540_PE
Library Layout PAIRED
Library Instrument 454 GS FLX+
Spot Length 0
 
SRA Experiment Id SRX332233  (Link to NCBI )
Experiment Title Genome sequencing of Planktothrix prolifica NIVA-CYA 540
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NC540_SG
Library Layout SINGLE
Library Instrument 454 GS FLX+
Spot Length 0
PROJECT COMPOSITION
Study Planktothrix prolifica NIVA-CYA 540
Organism Planktothrix prolifica NIVA-CYA 540
Analysis Projects Planktothrix prolifica NIVA-CYA 540
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
454
Library Method (MIGS-28)
454_FLX+_shotgun, 454-8kb-PairedEnd  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0020472
Organism Name
Planktothrix prolifica NIVA-CYA 540  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Planktothrix  
Genus Synonyms
  
Species
Planktothrix prolifica  
Subspecies
  
Species Synonyms
  
Strain
NIVA-CYA 540  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NIVA-CYA 540  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1255359
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Oscillatoriales  
NCBI Family
Microcoleaceae  
NCBI Genus
Planktothrix  
NCBI Species
Planktothrix prolifica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Purple  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Filaments
Diseases Actinomycosis
Known Habitats Aquatic
Lake
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Photosynthetic
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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