| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0020440
|
|
Project Name
|
Corynebacterium pseudotuberculosis Cp162
|
|
Other Names
|
|
|
Legacy ER Project ID
|
9750
|
|
Legacy GOLD ID
|
Gi16839, Gc02254
|
| NCBI BioProject Name | Corynebacterium pseudotuberculosis Cp162 |
|
NCBI BioProject ID
|
89445 |
|
NCBI BioProject Accession
|
PRJNA89445 |
|
NCBI Locus Tag
|
CP162
|
|
NCBI BioSample Accession
|
|
| PI | Azevedo,V. |
| Added By |
JGI automated process
on 2012-04-04 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Medical |
|
Sequencing Center
|
Rede Paraense de Genomica e Proteomica
(Brazil)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Corynebacterium pseudotuberculosis, an important animal pathogen, is the etiological agent of a disease that is commonly called caseous lymphadenitis (CLA). This disease is found in all the world's major sheep and goat and other animals like horse, camel, llama, buffalo and rare human, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
Journal of bacteriology
194(20):5718-9
Whole-genome sequence of Corynebacterium pseudotuberculosis strain Cp162, isolated from camel.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Genome Sequencing of Corynebacterium pseudotuberculosis - Rede Paraense de Genomica e Proteomica, Brazil |
| Analysis Projects |
Corynebacterium pseudotuberculosis Cp162 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
52
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0020440 |
| Organism Name |
Corynebacterium pseudotuberculosis Cp162
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Corynebacterium
|
| Genus Synonyms |
|
| Species |
Corynebacterium pseudotuberculosis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Cp162
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
|
| Type Strain |
No
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1161911 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Actinobacteria
|
| NCBI Order |
Corynebacteriales
|
| NCBI Family |
Corynebacteriaceae
|
| NCBI Genus |
Corynebacterium
|
| NCBI Species |
Corynebacterium pseudotuberculosis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals
|
| Ecosystem Type |
Skin
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
37 C
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
