PROJECT NAME
GOLD Project ID
Gp0019080  
Project Name
Salinispora arenicola ATCC BAA-917  
Other Names
  
Legacy ER Project ID
9223  
Legacy GOLD ID
Gi16312  
NCBI BioProject Name Salinispora arenicola ATCC BAA-917 strain:CNH-643
NCBI BioProject ID 84391
NCBI BioProject Accession
PRJNA84391  
NCBI Locus Tag
Q5S  
NCBI BioSample Accession
SAMN02470894  
PI
Added By JGI automated process on 2012-04-04
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center University of California, San Diego, Scripps Institute of Oceanography (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Salinispora arenicola ATCC BAA-917 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications 22479523
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Salinispora arenicola ATCC BAA-917
Analysis Projects Salinispora arenicola ATCC BAA-917
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0019080
Organism Name
Salinispora arenicola ATCC BAA-917  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Salinispora  
Genus Synonyms
  
Species
Salinispora arenicola  
Subspecies
  
Species Synonyms
  
Strain
ATCC BAA-917  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-917  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9567  
Exemplar Name
Salinispora arenicola  
Taxon DOI
10.1601/tx.9567  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 391967
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micromonosporales  
NCBI Family
Micromonosporaceae  
NCBI Genus
Salinispora  
NCBI Species
Salinispora arenicola  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 534371
Genbank 16S ID AY040619
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
25C  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Marine sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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