PROJECT NAME
GOLD Project ID
Gp0017913  
Project Name
Streptomyces somaliensis DSM 40738  
Other Names
  
Legacy ER Project ID
7972  
Legacy GOLD ID
Gi13688  
NCBI BioProject Name Streptomyces somaliensis DSM 40738
NCBI BioProject ID 81125
NCBI BioProject Accession
PRJNA81125  
NCBI Locus Tag
O3Q  
NCBI BioSample Accession
SAMN02471954  
PI
Added By JGI automated process on 2012-02-02
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center
  
Collaborating Institute University of Strathclyde (United Kingdom)
Funding Agency
  
Project Description
Streptomyces somaliensis is a Gram-positive, aerobic, filamentous human pathogenic actinomycete, which causes of Actinomycetoma.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(13):3544-5 Draft genome sequence of the human pathogen Streptomyces somaliensis, a significant cause of actinomycetoma.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Streptomyces somaliensis DSM 40738
Analysis Projects Streptomyces somaliensis DSM 40738
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
74  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0017913
Organism Name
Streptomyces somaliensis DSM 40738  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Streptomyces  
Genus Synonyms
  
Species
Streptomyces somaliensis  
Subspecies
  
Species Synonyms
  
Strain
DSM 40738  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 40738  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7270  
Exemplar Name
Streptomyces somaliensis  
Taxon DOI
10.1601/tx.7270  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1134445
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptomycetales  
NCBI Family
Streptomycetaceae  
NCBI Genus
Streptomyces  
NCBI Species
Streptomyces somaliensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Skin  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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