PROJECT NAME
GOLD Project ID
Gp0017678  
Project Name
Pseudoalteromonas rubra ATCC 29570  
Other Names
  
Legacy ER Project ID
7923  
Legacy GOLD ID
Gi13639  
NCBI BioProject Name Pseudoalteromonas rubra ATCC 29570
NCBI BioProject ID 77685
NCBI BioProject Accession
PRJNA77685  
NCBI Locus Tag
PRUB  
NCBI BioSample Accession
SAMN02470921  
PI Yu-Zhong Zhang
Added By JGI automated process on 2012-02-02
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Anti-tumor agent
Antibiotic production
Sequencing Center Shandong University (China)
Collaborating Institute Shandong University (China)
Funding Agency National Natural Science Foundation of China (NSFC) (China)
Project Description
Pseudoalteromonas rubra ATCC 29570 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(6):1637-8 Genome sequence of the cycloprodigiosin-producing bacterial strain Pseudoalteromonas rubra ATCC 29570(T).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Pseudoalteromonas project - Shandong University
Analysis Projects Pseudoalteromonas rubra ATCC 29570
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
500-bp Illumina paired-end library  
Number Of Reads
6,666,668  
Read Size
  
Vector
  
GC Percent
48  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0017678
Organism Name
Pseudoalteromonas rubra ATCC 29570  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudoalteromonas  
Genus Synonyms
  
Species
Pseudoalteromonas rubra  
Subspecies
  
Species Synonyms
  
Strain
ATCC 29570  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 29570  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2825  
Exemplar Name
Pseudoalteromonas rubra  
Taxon DOI
10.1601/tx.2900  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1117318
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Pseudoalteromonadaceae  
NCBI Genus
Pseudoalteromonas  
NCBI Species
Pseudoalteromonas rubra  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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