PROJECT NAME
GOLD Project ID
Gp0017613  
Project Name
Sphingomonas echinoides ATCC 14820  
Other Names
  
Legacy ER Project ID
7906  
Legacy GOLD ID
Gi13622  
NCBI BioProject Name Sphingomonas echinoides ATCC 14820
NCBI BioProject ID 76627
NCBI BioProject Accession
PRJNA76627  
NCBI Locus Tag
  
NCBI BioSample Accession
SAMN02470172  
PI Hyun Park
Added By JGI automated process on 2012-02-02
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biodegradation of pollutants
Sequencing Center Korea Polar Research Institute (KOPRI) (South Korea)
Collaborating Institute Korea Polar Research Institute (KOPRI) (South Korea)
Funding Agency Korea Polar Research Institute (KOPRI) (South Korea)
Project Description
Sphingomonas echinoides ATCC 14820 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Information
Database
  
Genome Publications Journal of bacteriology 194(7):1843 Draft genome sequence of Sphingomonas echinoides ATCC 14820.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Sphingomonas echinoides ATCC 14820
Analysis Projects Sphingomonas echinoides ATCC 14820
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Illumina GAii
Library Method (MIGS-28)
8-kb paired-end (454), 500-bp paired-end (Illumina)   
Number Of Reads
454 GS FLX Titanium system (110,779 reads) and Illumina GAIIx (18,021,882 reads)  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0017613
Organism Name
Sphingomonas echinoides ATCC 14820  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Sphingomonas  
Genus Synonyms
  
Species
Sphingomonas echinoides  
Subspecies
  
Species Synonyms
  
Strain
ATCC 14820  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 14820  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2598  
Exemplar Name
Sphingomonas echinoides  
Taxon DOI
10.1601/tx.1179  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1112212
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Sphingomonas  
NCBI Species
Sphingomonas echinoides  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab synthesis  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Chemoheterotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?