PROJECT INFORMATION
GOLD Project ID
Gp0016825  
Project Name
Rubrivivax gelatinosus IL144  
Other Names
  
Legacy ER Project ID
22849  
Legacy GOLD ID
Gc02185  
NCBI BioProject Name Rubrivivax gelatinosus IL144
NCBI BioProject ID 62703
NCBI BioProject Accession PRJNA62703
NCBI Locus Tag
RGE  
NCBI BioSample Accession SAMD00061116
PI Fujita N
Added By Nikos Kyrpides on 2012-02-06
Last Modified By Alejandro Rodriguez Mojica on 2018-07-11
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Biotechnological
Bioremediation
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Rubrivivax gelatinosus IL144 genome sequencing project.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Database
  
Genome Publications Journal of bacteriology 194(13):3541-2 Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144.
Other Publications
  
PROJECT COMPOSITION
Study Rubrivivax gelatinosus IL144
Analysis Projects Rubrivivax gelatinosus IL144
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
71  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0016825
Organism Name
Rubrivivax gelatinosus IL144  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Rubrivivax  
Genus Synonyms
  
Species
Rubrivivax gelatinosus  
Subspecies
  
Species Synonyms
  
Strain
IL144  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NBRC 100245  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 983917
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
  
NCBI Genus
Rubrivivax  
NCBI Species
Rubrivivax gelatinosus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
Purple  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Sludge
Metabolisms
  
Phenotypes
  
Energy Sources Phototroph
Methylotroph

 

 

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