PROJECT INFORMATION
GOLD Project ID
Gp0016108  
Project Name
Methylosinus sp. LW3  
Other Names
  
Legacy ER Project ID
21914  
Legacy GOLD ID
Gi13951  
NCBI BioProject Name Methylosinus sp. LW3
NCBI BioProject ID 161487
NCBI BioProject Accession PRJNA161487
NCBI Locus Tag
METLW3  
NCBI BioSample Accession SAMN02597193
PI Ludmila Chistoserdova
Added By JGI automated process on 2012-01-27
Last Modified By JGI automated process on 2020-09-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Washington (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methylotrophs are of interest to the following DOE-supported Biological and Environmental Research programs: the Climate Change Research Program, as key participants in maintaining the levels of major green-house gases such as methane, CO2 and N2O in the atmosphere; the Natural and Accelerated Bioremediation Research Program, as agents in bioremediation of such hazardous pollutants as MTBE, trichloroethylene and other halogenated methanes, and in nitrogen removal from sewage and fertilized soils; the Environmental Management Science Program, as major players in global cycling of carbon, nitrogen and sulfur, and agents in bioremediation of environmental pollutants such as chlorinated solvents; the Microbial Genome Program as representatives of microbial groups that have evolved to specialize in a specific metabolic mode and, respectively, life style, such as dependence on C1 compounds, dependence on nitrate or nitrite; the Ocean Science Program, as major players in methane and nitrate/ nitrite conversion in oceans; and the Genomics: GTL Program as carriers of specific enzyme and regulatory systems allowing unique biochemical transformation capacities important to DOE missions, such as inexpensive and efficient environmental clean-up, biodegradable plastic production potential etc.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genomes of fifty methylotrophs isolated from Lake Washington
Organism Methylosinus sp. LW3
Analysis Projects Methylosinus sp. LW3
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0016108
Organism Name
Methylosinus sp. LW3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Methylosinus  
Genus Synonyms
  
Species
Methylosinus sp. LW3  
Subspecies
  
Species Synonyms
  
Strain
LW3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 107635
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Methylocystaceae  
NCBI Genus
Methylosinus  
NCBI Species
Methylosinus sp. LW3  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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