PROJECT NAME
GOLD Project ID
Gp0015913  
Project Name
Labrys methylaminiphilus JLW10  
Other Names
  
Legacy ER Project ID
21864  
Legacy GOLD ID
Gi13959  
NCBI BioProject Name Labrys methylaminiphilus JLW10
NCBI BioProject ID 157081
NCBI BioProject Accession
PRJNA157081  
NCBI Locus Tag
LABME  
NCBI BioSample Accession
SAMN05660656  
PI Ludmila Chistoserdova
Added By JGI automated process on 2012-01-27
Last Modified By Tatiparthi B. Reddy on 2012-06-06
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methylotrophs are of interest to the following DOE-supported Biological and Environmental Research programs: the Climate Change Research Program, as key participants in maintaining the levels of major green-house gases such as methane, CO2 and N2O in the atmosphere; the Natural and Accelerated Bioremediation Research Program, as agents in bioremediation of such hazardous pollutants as MTBE, trichloroethylene and other halogenated methanes, and in nitrogen removal from sewage and fertilized soils; the Environmental Management Science Program, as major players in global cycling of carbon, nitrogen and sulfur, and agents in bioremediation of environmental pollutants such as chlorinated solvents; the Microbial Genome Program as representatives of microbial groups that have evolved to specialize in a specific metabolic mode and, respectively, life style, such as dependence on C1 compounds, dependence on nitrate or nitrite; the Ocean Science Program, as major players in methane and nitrate/ nitrite conversion in oceans; and the Genomics: GTL Program as carriers of specific enzyme and regulatory systems allowing unique biochemical transformation capacities important to DOE missions, such as inexpensive and efficient environmental clean-up, biodegradable plastic production potential etc.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Genomes of fifty methylotrophs isolated from Lake Washington
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015913
Organism Name
Labrys methylaminiphilus JLW10  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Labrys  
Genus Synonyms
  
Species
Labrys methylaminiphilus  
Subspecies
  
Species Synonyms
  
Strain
JLW10  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9447  
Exemplar Name
Labrys methylaminiphilus  
Taxon DOI
10.1601/tx.9447  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1096091
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Xanthobacteraceae  
NCBI Genus
Labrys  
NCBI Species
Labrys methylaminiphilus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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