PROJECT NAME
GOLD Project ID
Gp0015411  
Project Name
Agrobacterium tumefaciens 5A  
Other Names
  
Legacy ER Project ID
22839  
Legacy GOLD ID
Gi12102  
NCBI BioProject Name Agrobacterium tumefaciens 5A
NCBI BioProject ID 75079
NCBI BioProject Accession PRJNA75079
NCBI Locus Tag
AT5A  
NCBI BioSample Accession SAMN02472264
PI Christopher Rensing
Added By Nikos Kyrpides on 2012-01-28
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Sequencing Center University of Arizona (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
arsenite-oxidizing strain  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(4):903 Genome sequence of the arsenite-oxidizing strain Agrobacterium tumefaciens 5A.
Other Publications
  
PROJECT COMPOSITION
Study Agrobacterium tumefaciens 5A
Analysis Projects Agrobacterium tumefaciens 5A
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015411
Organism Name
Agrobacterium tumefaciens 5A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Agrobacterium  
Genus Synonyms
  
Species
Agrobacterium tumefaciens  
Subspecies
  
Species Synonyms
  
Strain
5A  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1107544
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Agrobacterium  
NCBI Species
Agrobacterium tumefaciens  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Agricultural land  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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