PROJECT INFORMATION
GOLD Project ID
Gp0015311  
Project Name
Persephonella lauensis IFO5_L8  
Other Names
  
Legacy ER Project ID
22036  
Legacy GOLD ID
Gi14062  
NCBI BioProject Name Persephonella sp. IF05-L8
NCBI BioProject ID 237257
NCBI BioProject Accession PRJNA237257
NCBI Locus Tag
BO13  
NCBI BioSample Accession SAMN02841204
PI anna-louise reysenbach
Added By JGI automated process on 2012-01-27
Last Modified By JGI automated process on 2021-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Portland State University
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1896009  (Link to NCBI )
Experiment Title Persephonella lauensis IFO5_L8
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1896014  (Link to NCBI )
Experiment Title Persephonella lauensis IFO5_L8
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1896013  (Link to NCBI )
Experiment Title Persephonella lauensis IFO5_L8
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1896012  (Link to NCBI )
Experiment Title Persephonella lauensis IFO5_L8
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1896011  (Link to NCBI )
Experiment Title Persephonella lauensis IFO5_L8
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1896010  (Link to NCBI )
Experiment Title Persephonella lauensis IFO5_L8
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OPXW
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Bacterial isolates from the 'uncultivated': new families, genera and species from deep-sea vents
Organism Persephonella lauensis IFO5_L8
Analysis Projects Persephonella lauensis IFO5_L8
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
35  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0015311
Organism Name
Persephonella lauensis IFO5_L8  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Persephonella  
Genus Synonyms
  
Species
Persephonella lauensis  
Subspecies
  
Species Synonyms
  
Strain
IFO5_L8  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1158338
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Aquificales  
NCBI Family
Hydrogenothermaceae  
NCBI Genus
Persephonella  
NCBI Species
Persephonella sp. IF05-L8  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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