PROJECT INFORMATION
GOLD Project ID
Gp0014904  
Project Name
Verrucomicrobium sp. 3C  
Other Names
  
Legacy ER Project ID
22745  
Legacy GOLD ID
Gi14075  
NCBI BioProject Name Verrucomicrobium sp. 3C
NCBI BioProject ID 165235
NCBI BioProject Accession PRJNA165235
NCBI Locus Tag
A37A  
NCBI BioSample Accession SAMN02256457
PI marina kalyuzhnaya
Added By JGI automated process on 2012-01-27
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Comparative analysis
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Washington (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Revising methanotrophy: a comprehensive genomic probing of the unexpected genetic and metabolic diversity of aerobic methane consuming bacteria.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Revising methanotrophy: a comprehensive genomic probing of the unexpected genetic and metabolic diversity of aerobic methane consuming bacteria.
Organism Verrucomicrobium sp. 3C
Analysis Projects Verrucomicrobium sp. 3C
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
61  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014904
Organism Name
Verrucomicrobium sp. 3C  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
VERRUCOMICROBIA  
Genus
Verrucomicrobium  
Genus Synonyms
  
Species
Verrucomicrobium sp. 3C  
Subspecies
  
Species Synonyms
  
Strain
3C  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1134055
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Verrucomicrobia  
NCBI Class
Verrucomicrobiae  
NCBI Order
Verrucomicrobiales  
NCBI Family
Verrucomicrobiaceae  
NCBI Genus
Verrucomicrobium  
NCBI Species
Verrucomicrobium sp. 3C  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Lake
Ponds
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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