PROJECT NAME
GOLD Project ID
Gp0014232  
Project Name
Novosphingobium pentaromativorans US6-1  
Other Names
  
Legacy ER Project ID
22837  
Legacy GOLD ID
Gi12099  
NCBI BioProject Name Novosphingobium pentaromativorans US6-1
NCBI BioProject ID 73345
NCBI BioProject Accession
PRJNA73345  
NCBI Locus Tag
NSU  
NCBI BioSample Accession
SAMN02470157  
PI Kae Kyoung Kwon
Added By Nikos Kyrpides on 2012-01-28
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Animal Pathogen
Biotechnological
Human Pathogen
Medical
Sequencing Center Korea Institute of Ocean Science and Technology (KIOST) (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
can utilize high molecular weight PAHs as sole carbon and energy source  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(4):907 Genome sequence of benzo(a)pyrene-degrading bacterium Novosphingobium pentaromativorans US6-1.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Novosphingobium pentaromativorans US6-1
Analysis Projects Novosphingobium pentaromativorans US6-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0014232
Organism Name
Novosphingobium pentaromativorans US6-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Novosphingobium  
Genus Synonyms
  
Species
Novosphingobium pentaromativorans  
Subspecies
  
Species Synonyms
  
Strain
US6-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 17173  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8746  
Exemplar Name
Novosphingobium pentaromativorans  
Taxon DOI
10.1601/tx.8746  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1088721
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Novosphingobium  
NCBI Species
Novosphingobium pentaromativorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Death of coral reefs
Known Habitats Fresh water
Host
Sediment
Soil
Metabolisms Degrades aromatic hydrocarbons
Phenotypes
  
Energy Sources
  

 

 

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