PROJECT INFORMATION
GOLD Project ID
Gp0013942  
Project Name
Actinopolymorpha alba DSM 45243  
Other Names
  
Legacy ER Project ID
20242  
Legacy GOLD ID
Gi11094  
NCBI BioProject Name Actinopolymorpha alba DSM 45243
NCBI BioProject Accession PRJNA169810
NCBI Locus Tag
B141  
NCBI BioSample Accession SAMN02440435
Source Sample ID
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI 10.46936/10.25585/60000886
JGI Portal Download Raw Sequence Data
Genome Publications Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
PubMed: 28604660 DOI: 10.1038/nbt.3886
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Actinopolymorpha alba DSM 45243
Analysis Projects Actinopolymorpha alba DSM 45243
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013942
Organism Name
Actinopolymorpha alba DSM 45243  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinopolymorpha  
Genus Synonyms
  
Species
Actinopolymorpha alba  
Subspecies
  
Species Synonyms
  
Strain
DSM 45243  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 45243  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14606  
Exemplar Name
Actinopolymorpha alba  
Taxon DOI
10.1601/tx.14606  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1120950
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinomycetota  
NCBI Class
Actinomycetes  
NCBI Order
Propionibacteriales  
NCBI Family
Actinopolymorphaceae  
NCBI Genus
Actinopolymorpha  
NCBI Species
Actinopolymorpha alba  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
Rhizosphere  
Specific Ecosystem
Soil  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 844426
Genbank 16S ID EU706350
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
6  
Cell Diameter
  
Cell Length
  
Color
White  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Rhizosphere
Metabolisms
  
Phenotypes Catalase positive
Energy Sources Heterotroph

 

 

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