PROJECT NAME
GOLD Project ID
Gp0013738  
Project Name
Bos taurus Holstein  
Other Names
  
Legacy ER Project ID
20188  
Legacy GOLD ID
Gr00304  
NCBI BioProject Name
  
NCBI BioProject ID
  
NCBI BioProject Accession
  
NCBI Locus Tag
CSY  
NCBI BioSample Accession
  
PI Stephen S Moore
Added By Tatiparthi B. Reddy on 2011-12-14 00:00:00.0
Last Modified By Tatiparthi B. Reddy on 2011-12-22 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Resequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance Agricultural
Sequencing Center University of Alberta (Canada)
Collaborating Institute
  
Funding Agency Natural Sciences and Engineering Research Council of Canada (NSERC) (Canada)
Project Description
The whole-genome resequencing of two Bos taurus bulls from distinct breeds (Black Angus and Holstein) for the purpose of identifying and annotating novel forms of genetic variation in cattle.   
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications BMC genomics 12(559):559 Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Bos taurus Holstein
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 4: Annotation-Directed
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) SOLiD
Library Method (MIGS-28)
A combination of fragment and mate-paired libraries  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
30  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005978
Organism Name
Bos taurus Holstein  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Bos  
Genus Synonyms
  
Species
Bos taurus  
Subspecies
  
Species Synonyms
  
Strain
Holstein  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 9913
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
  
NCBI Family
Bovidae  
NCBI Genus
Bos  
NCBI Species
Bos taurus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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