PROJECT INFORMATION | |
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GOLD Project ID
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Gp0013650
|
Project Name
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Glycomyces tenuis DSM 44171
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Other Names
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|
Legacy ER Project ID
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20683
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Legacy GOLD ID
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Gi11535
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NCBI BioProject Name | Glycomyces tenuis DSM 44171 |
NCBI BioProject ID
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163051 |
NCBI BioProject Accession
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PRJNA163051 |
NCBI Locus Tag
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YWW
|
NCBI BioSample Accession
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SAMN02441561 |
PI | Nikos Kyrpides |
Added By |
JGI automated process
on 2012-01-11 |
Last Modified By |
JGI automated process
on 2014-08-18 |
Project Comments |
|
Project Status
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Permanent Draft
|
Project Relevance
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Tree of Life GEBA-KMG |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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Leibniz Institute
(Germany)
|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
Project Description
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Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.
|
Is JGI Project |
Yes
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
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|
Database
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|
Genome Publications
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Nature biotechnology
35(7):676-683
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
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Other Publications
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|
SRA Experiment |
|
PROJECT COMPOSITION | |
Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
Organism |
Glycomyces tenuis DSM 44171 |
Analysis Projects |
Glycomyces tenuis DSM 44171 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
Finishing Goal
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Level 1: Standard Draft |
Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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|
Sequencing Technology
(MIGS-29)
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Illumina |
Library Method
(MIGS-28)
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|
Library Layout
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|
Library Screening Method
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Number Of Reads
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Read Size
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Vector
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|
GC Percent |
70
|
Chromosome Count |
|
Plasmid Count |
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0013650 |
Organism Name |
Glycomyces tenuis DSM 44171
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
ACTINOBACTERIA
|
Genus |
Glycomyces
|
Genus Synonyms |
|
Species |
Glycomyces tenuis
|
Subspecies |
|
Species Synonyms |
|
Strain |
DSM 44171
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
DSM 44171
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.7674
|
Exemplar Name |
Glycomyces tenuis
|
Taxon DOI |
10.1601/tx.7674
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
1111731 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Actinobacteria
|
NCBI Class |
Actinomycetia
|
NCBI Order |
Glycomycetales
|
NCBI Family |
Glycomycetaceae
|
NCBI Genus |
Glycomyces
|
NCBI Species |
Glycomyces tenuis
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Terrestrial
|
Ecosystem Type |
Soil
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
169291 |
Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
|
Cell Shape |
|
Motility |
|
Sporulation |
Sporulating
|
Temperature Range |
Mesophile
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram+
|
Biotic Relationships |
|
Symbiotic Physical Interaction |
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Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
|
Known Habitats |
Soil |
Metabolisms |
|
Phenotypes |
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Energy Sources |
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