PROJECT INFORMATION
GOLD Project ID
Gp0013519  
Project Name
Vibrio sp. EJY3  
Other Names
  
Legacy ER Project ID
6283  
Legacy GOLD ID
Gc02076  
NCBI BioProject Name Vibrio sp. EJY3
NCBI BioProject ID 77223
NCBI BioProject Accession PRJNA77223
NCBI Locus Tag
VEJY3  
NCBI BioSample Accession
PI Hanseong Roh
Added By Hanseong Roh on 2012-01-04
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biofuels
Sequencing Center Korea University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
The Vibrio sp. EJY3 can grow using 3,6-anhydrogalactose as a sole carbon source. Using this competency, the expense of carbon source for industrial products could be reduced  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(10):2773-4 Genome sequence of Vibrio sp. strain EJY3, an agarolytic marine bacterium metabolizing 3,6-anhydro-L-galactose as a sole carbon source.
Other Publications
  
PROJECT COMPOSITION
Study Vibrio sp. EJY3
Analysis Projects Vibrio sp. EJY3
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Illumina GAIIx
SOLiD
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
2  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0013519
Organism Name
Vibrio sp. EJY3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
  
Species
Vibrio sp. EJY3  
Subspecies
  
Species Synonyms
  
Strain
EJY3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1116375
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio sp. EJY3  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Arthropoda  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Vibrio-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Aquatic
Metabolisms Saccharolytic
Phenotypes Non-Pathogen
Energy Sources Autotroph

 

 

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