PROJECT NAME
GOLD Project ID
Gp0013505  
Project Name
Flavobacterium psychrophilum DSM 3660  
Other Names
  
Legacy ER Project ID
20648  
Legacy GOLD ID
Gi11500  
NCBI BioProject Name Flavobacterium psychrophilum DSM 3660
NCBI BioProject ID 221035
NCBI BioProject Accession
PRJNA221035  
NCBI Locus Tag
Q364  
NCBI BioSample Accession
SAMN02745938  
PI Markus Goker
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2014-10-27
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Flavobacterium psychrophilum DSM 3660
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Illumina HiSeq 2500
Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes; Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013505
Organism Name
Flavobacterium psychrophilum DSM 3660  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Flavobacterium  
Genus Synonyms
  
Species
Flavobacterium psychrophilum  
Subspecies
  
Species Synonyms
  
Strain
DSM 3660  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 3660  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8288  
Exemplar Name
Flavobacterium psychrophilum  
Taxon DOI
10.1601/tx.8109  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121894
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Flavobacterium  
NCBI Species
Flavobacterium psychrophilum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 38818
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
  
Temperature Optimum
15-18 C  
Salinity
  
pH
  
Cell Diameter
0.3-0.5 um  
Cell Length
1.0-5.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Fish
Host
Metabolisms
  
Phenotypes Catalase positive
Energy Sources
  

 

 

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