PROJECT NAME
GOLD Project ID
Gp0013480  
Project Name
Clostridium aminophilum F, DSM 10710  
Other Names
  
Legacy ER Project ID
20419  
Legacy GOLD ID
Gi11271  
NCBI BioProject Name [Clostridium] aminophilum DSM 10710
NCBI BioProject ID 234874
NCBI BioProject Accession
PRJNA234874  
NCBI Locus Tag
BR86  
NCBI BioSample Accession
SAMN02745353  
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By Nikos Kyrpides on 2016-06-03
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Clostridium aminophilum F, DSM 10710
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013480
Organism Name
Clostridium aminophilum F  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium aminophilum  
Subspecies
  
Species Synonyms
  
Strain
F  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 10710  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3891  
Exemplar Name
Clostridium aminophilum  
Taxon DOI
10.1601/tx.3891  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121296
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Lachnospiraceae  
NCBI Genus
Lachnoclostridium  
NCBI Species
[Clostridium] aminophilum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Foregut  
Specific Ecosystem
Rumen  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 162132
Genbank 16S ID
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
1 um  
Cell Length
1.5 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Bovine
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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