PROJECT INFORMATION
GOLD Project ID
Gp0013402  
Project Name
Arenimonas donghaensis DSM 18148, HO3-R19  
Other Names
  
Legacy ER Project ID
20307  
Legacy GOLD ID
Gi11159  
NCBI BioProject Name Arenimonas donghaensis DSM 18148 = HO3-R19
NCBI BioProject ID 234915
NCBI BioProject Accession PRJNA234915
NCBI Locus Tag
BR45  
NCBI BioSample Accession SAMN02745858
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11
Last Modified By JGI automated process on 2020-06-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1760623  (Link to NCBI )
Experiment Title Arenimonas donghaensis DSM 18148
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TSPO
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Arenimonas donghaensis DSM 18148, HO3-R19
Analysis Projects Arenimonas donghaensis DSM 18148, HO3-R19
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0082501
Organism Name
Arenimonas donghaensis DSM 18148, HO3-R19  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Arenimonas  
Genus Synonyms
  
Species
Arenimonas donghaensis  
Subspecies
  
Species Synonyms
  
Strain
DSM 18148  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 18148  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10603  
Exemplar Name
Arenimonas donghaensis  
Taxon DOI
10.1601/tx.10603  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121014
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Arenimonas  
NCBI Species
Arenimonas donghaensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Beach  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 718868
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
7  
Cell Diameter
0.4-0.6 um  
Cell Length
1.3-3.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sea sand
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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