PROJECT NAME
GOLD Project ID
Gp0013271  
Project Name
Bradyrhizobium japonicum USDA 6  
Other Names
  
Legacy ER Project ID
6212  
Legacy GOLD ID
Gc02045  
NCBI BioProject Name Bradyrhizobium japonicum USDA 6
NCBI BioProject ID 67463
NCBI BioProject Accession PRJDA67463
NCBI Locus Tag
BJ6T  
NCBI BioSample Accession
PI
Added By Nikos Kyrpides on 2011-12-09
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Kyoto Sangyo University
Collaborating Institute
  
Funding Agency
  
Project Description
Bradyrhizobium japonicum USDA 6 genome sequencing  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Bradyrhizobium japonicum USDA 6
Analysis Projects Bradyrhizobium japonicum USDA 6
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0009853
Organism Name
Bradyrhizobium japonicum USDA 6  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Bradyrhizobium  
Genus Synonyms
  
Species
Bradyrhizobium japonicum  
Subspecies
  
Species Synonyms
  
Strain
USDA 6  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
10.1601/ex.1292  
Exemplar Name
Bradyrhizobium japonicum  
Taxon DOI
10.1601/tx.1460  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1037409
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Bradyrhizobium  
NCBI Species
Bradyrhizobium japonicum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
5-8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Glycine max  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Root nodule
Soil
Host
Plant root
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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