PROJECT NAME
GOLD Project ID
Gp0013267  
Project Name
Thioalkalivibrio paradoxus ARh 1  
Other Names
  
Legacy ER Project ID
20196  
Legacy GOLD ID
Gi12082  
NCBI BioProject Name Thioalkalivibrio paradoxus ARh 1
NCBI BioProject ID 80857
NCBI BioProject Accession
PRJNA80857  
NCBI Locus Tag
THIPA  
NCBI BioSample Accession
SAMN05660334  
PI Gerard Muyzer
Added By Ioanna Pagani on 2011-12-15
Last Modified By Supratim Mukherjee on 2015-10-15
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Delft University of Technology
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing of 3 haloalkaliphilic thiocyanate-utilizing chemolithoautotrophic bacteria of the genus Thioalkalivibrio with a potential use for a sustainable removal of toxic sulfur compounds from waste streams and energy carriers  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Information
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Genome sequencing of 3 haloalkaliphilic thiocyanate-utilizing chemolithoautotrophic bacteria of the genus Thioalkalivibrio with a potential use for a sustainable removal of toxic sulfur compounds from waste streams and energy carriers
Analysis Projects Thioalkalivibrio paradoxus ARh 1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013267
Organism Name
Thioalkalivibrio paradoxus ARh 1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Thioalkalivibrio  
Genus Synonyms
  
Species
Thioalkalivibrio paradoxus  
Subspecies
  
Species Synonyms
  
Strain
ARh 1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
10.1601/ex.2186  
Exemplar Name
Thialkalivibrio paradoxus  
Taxon DOI
10.1601/tx.2186  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 108010
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Chromatiales  
NCBI Family
Ectothiorhodospiraceae  
NCBI Genus
Thioalkalivibrio  
NCBI Species
Thioalkalivibrio paradoxus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms Sulfur oxidizer
Phenotypes Alkalophile
Energy Sources Chemolithoautotroph

 

 

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