PROJECT NAME
GOLD Project ID
Gp0013140  
Project Name
Pleomorphomonas oryzae DSM 16300  
Other Names
  
Legacy ER Project ID
20922  
Legacy GOLD ID
Gi11774  
NCBI BioProject Name Pleomorphomonas oryzae DSM 16300
NCBI BioProject ID 185614
NCBI BioProject Accession
PRJNA185614  
NCBI Locus Tag
G522  
NCBI BioSample Accession
SAMN02440654  
PI Nikos Kyrpides
Added By JGI automated process on 2012-01-11 00:00:00.0
Last Modified By JGI automated process on 2014-10-27 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA-KMG
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: one thousand microbial genomes (KMG) project. The goal of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative is to sequence genomes to fill phylogenetic gaps, generating reference genomes for every major and minor group of bacteria and archaea. Currently sequenced genomes have provided highly uneven coverage of the type strain material present in public culture collections. The Microbial Earth Project is an initiative of the Microbial Genomics Program of the DOE Joint Genome Institute that focuses on 1000 Type strains from the DSMZ and ATCC repositories.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Analysis Projects Pleomorphomonas oryzae DSM 16300
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013140
Organism Name
Pleomorphomonas oryzae DSM 16300  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Pleomorphomonas  
Genus Synonyms
  
Species
Pleomorphomonas oryzae  
Subspecies
  
Species Synonyms
  
Strain
DSM 16300  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16300  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9444  
Exemplar Name
Pleomorphomonas oryzae  
Taxon DOI
10.1601/tx.9444  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1122963
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Methylocystaceae  
NCBI Genus
Pleomorphomonas  
NCBI Species
Pleomorphomonas oryzae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 387846
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Pleomorphic-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
25 C  
Salinity
  
pH
  
Cell Diameter
0.5-1.0 um  
Cell Length
1.0-5.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Plants
Rice paddies
Metabolisms
  
Phenotypes Catalase positive
Energy Sources
  

 

 

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