PROJECT INFORMATION
GOLD Project ID
Gp0012959  
Project Name
Thiomonas sp. FB-6, DSM 25805  
Other Names
  
Legacy ER Project ID
6091  
Legacy GOLD ID
Gi10891  
NCBI BioProject Name Thiomonas sp. FB-6
NCBI BioProject ID 178046
NCBI BioProject Accession PRJNA178046
NCBI Locus Tag
D466  
NCBI BioSample Accession SAMN02441003
PI Denise Akob
Added By Ionna Pagani on 2011-11-17
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Natural Attenuation
Tree of Life
Bioremediation
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Friedrich Schiller University of Jena (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Heavy Metal Immobilization at Moderately Acidic pH by New Fe(II)- and Mn(II)-Oxidizing Bacteria  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Thiomonas sp. FB-6, DSM 25805
Organism Thiomonas sp. FB-6, DSM 25805
Analysis Projects Thiomonas sp. FB-6, DSM 25805
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012959
Organism Name
Thiomonas sp. FB-6, DSM 25805  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Thiomonas  
Genus Synonyms
  
Species
Thiomonas sp. FB-6  
Subspecies
  
Species Synonyms
  
Strain
FB-6  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 25805  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1158291
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
  
NCBI Genus
Thiomonas  
NCBI Species
Thiomonas sp. FB-6  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Mine  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
5  
Cell Diameter
0.6u  
Cell Length
2u  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Sediment
Metabolisms Iron oxidizer
Phenotypes
  
Energy Sources Mixotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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