PROJECT NAME
GOLD Project ID
Gp0012642  
Project Name
Phaeobacter inhibens T5, DSM 16374  
Other Names
  
Legacy ER Project ID
5983  
Legacy GOLD ID
Gi10860  
NCBI BioProject Name Phaeobacter inhibens DSM 16374
NCBI BioProject ID 88111
NCBI BioProject Accession
PRJNA88111  
NCBI Locus Tag
INHI  
NCBI BioSample Accession
SAMN02440777  
PI Hans-Peter Klenk
Added By Tatiparthi B. Reddy on 2011-10-12
Last Modified By Tatiparthi B. Reddy on 2014-12-13
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Phaeobacter inhibens DSM 16374 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Whole genome type strain sequences of the genera Phaeobacter and Leisingera
Analysis Projects Phaeobacter inhibens T5, DSM 16374
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
Genome was closed by DSMZ and submitted on April 2013 to IMG  
Sequencing Technology (MIGS-29) Illumina
Illumina HiSeq 2000
Library Method (MIGS-28)
Two Illumina paired-end libraries (225 bp and 9kb insert size)  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012642
Organism Name
Phaeobacter inhibens T5, DSM 16374  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Phaeobacter  
Genus Synonyms
  
Species
Phaeobacter inhibens  
Subspecies
  
Species Synonyms
  
Strain
T5, DSM 16374  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16374  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10132  
Exemplar Name
Phaeobacter inhibens  
Taxon DOI
10.1601/tx.10132  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 999548
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Phaeobacter  
NCBI Species
Phaeobacter inhibens  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY177712
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
27-29C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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