PROJECT NAME
GOLD Project ID
Gp0012240  
Project Name
Amycolatopsis nigrescens CSC17Ta-90, DSM 44992  
Other Names
  
Legacy ER Project ID
19921  
Legacy GOLD ID
Gi10725  
NCBI BioProject Name Amycolatopsis nigrescens CSC17Ta-90
NCBI BioProject ID 82633
NCBI BioProject Accession
PRJNA82633  
NCBI Locus Tag
Amyni  
NCBI BioSample Accession
SAMN02261308  
PI Hans-Peter Klenk
Added By Nikos Kyrpides on 2011-08-18
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Amycolatopsis nigrescens CSC17Ta-90 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genome sequences of selected type strains of the genus Amycolatopsis
Analysis Projects Amycolatopsis nigrescens CSC17Ta-90, DSM 44992
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012240
Organism Name
Amycolatopsis nigrescens CSC17Ta-90, DSM 44992  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Amycolatopsis  
Genus Synonyms
  
Species
Amycolatopsis nigrescens  
Subspecies
  
Species Synonyms
  
Strain
CSC17Ta-90, DSM 44992  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 44992  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10596  
Exemplar Name
Amycolatopsis nigrescens  
Taxon DOI
10.1601/tx.10596  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1068980
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Pseudonocardiales  
NCBI Family
Pseudonocardiaceae  
NCBI Genus
Amycolatopsis  
NCBI Species
Amycolatopsis nigrescens  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Built environment  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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