PROJECT NAME
GOLD Project ID
Gp0012221  
Project Name
Amycolatopsis methanolica 239, DSM 44096  
Other Names
  
Legacy ER Project ID
19923  
Legacy GOLD ID
Gi10727  
NCBI BioProject Name Amycolatopsis methanolica 239
NCBI BioProject ID 82743
NCBI BioProject Accession
PRJNA82743  
NCBI Locus Tag
Amyme  
NCBI BioSample Accession
SAMN02261309  
PI Hans-Peter Klenk
Added By Nikos Kyrpides on 2011-08-18
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Amycolatopsis methanolica 239 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genome sequences of selected type strains of the genus Amycolatopsis
Analysis Projects Amycolatopsis methanolica 239, DSM 44096
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
72  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012221
Organism Name
Amycolatopsis methanolica 239, DSM 44096  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Amycolatopsis  
Genus Synonyms
  
Species
Amycolatopsis methanolica  
Subspecies
  
Species Synonyms
  
Strain
239, DSM 44096  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 44096  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6720  
Exemplar Name
Amycolatopsis methanolica  
Taxon DOI
10.1601/tx.6720  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1068978
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Pseudonocardiales  
NCBI Family
Pseudonocardiaceae  
NCBI Genus
Amycolatopsis  
NCBI Species
Amycolatopsis methanolica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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