PROJECT INFORMATION
GOLD Project ID
Gp0011632  
Project Name
Rhodospirillum rubrum F11  
Other Names
  
Legacy ER Project ID
5401  
Legacy GOLD ID
Gi10271, Gc01977  
NCBI BioProject Name Rhodospirillum rubrum F11
NCBI BioProject Accession PRJNA67413
NCBI Locus Tag
F11  
NCBI BioSample Accession
PI
Added By JGI automated process on 2011-07-14
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center University of Washington (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
F11 is a mutant strain of Rhodospirillum rubrum (ATCC 11170) with approximately 75 genomic nucleotide differences with the previously published wild type genome. The mutant phenotype is of interest as it cannot survive anaerobically, while the wild type strain can. This is relevant to the biosynthesis of rhodoquinone, a cofactor required for anaerobic growth and the malate dismutation pathway. F11 does not produce rhodoquinone due to one of these mutations.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Journal of bacteriology 194(5):965-71 Identification of a new gene required for the biosynthesis of rhodoquinone in Rhodospirillum rubrum.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Rhodospirillum rubrum F11
Organism Rhodospirillum rubrum F11
Analysis Projects Rhodospirillum rubrum F11
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina GAIIx
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011632
Organism Name
Rhodospirillum rubrum F11  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rhodospirillum  
Genus Synonyms
  
Species
Rhodospirillum rubrum  
Subspecies
  
Species Synonyms
  
Strain
F11  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Genetically modified  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1036743
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodospirillales  
NCBI Family
Rhodospirillaceae  
NCBI Genus
Rhodospirillum  
NCBI Species
Rhodospirillum rubrum  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab synthesis  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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