Studies
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38,685 |
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Biosamples
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80,474 |
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Sequencing Projects
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301,416 |
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Analysis Projects
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244,236 |
| Organisms | 362,420 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0011632
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Project Name
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Rhodospirillum rubrum F11
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Other Names
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Legacy ER Project ID
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5401
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Legacy GOLD ID
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Gi10271, Gc01977
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| NCBI BioProject Name | Rhodospirillum rubrum F11 |
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NCBI BioProject ID
|
67413 |
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NCBI BioProject Accession
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PRJNA67413 |
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NCBI Locus Tag
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F11
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NCBI BioSample Accession
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| PI | |
| Added By |
JGI automated process
on 2011-07-14 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Sequencing Center
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University of Washington
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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F11 is a mutant strain of Rhodospirillum rubrum (ATCC 11170) with approximately 75 genomic nucleotide differences with the previously published wild type genome. The mutant phenotype is of interest as it cannot survive anaerobically, while the wild type strain can. This is relevant to the biosynthesis of rhodoquinone, a cofactor required for anaerobic growth and the malate dismutation pathway. F11 does not produce rhodoquinone due to one of these mutations.
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| Is JGI Project |
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Journal of bacteriology
194(5):965-71
Identification of a new gene required for the biosynthesis of rhodoquinone in Rhodospirillum rubrum.
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Rhodospirillum rubrum F11 |
| Organism |
Rhodospirillum rubrum F11 |
| Analysis Projects |
Rhodospirillum rubrum F11 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina GAIIx |
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
65
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| Chromosome Count |
1
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0011632 |
| Organism Name |
Rhodospirillum rubrum F11
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Rhodospirillum
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| Genus Synonyms |
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| Species |
Rhodospirillum rubrum
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| Subspecies |
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| Species Synonyms |
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| Strain |
F11
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Genetically modified
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1036743 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Rhodospirillales
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| NCBI Family |
Rhodospirillaceae
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| NCBI Genus |
Rhodospirillum
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| NCBI Species |
Rhodospirillum rubrum
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
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| Ecosystem Category |
Lab synthesis
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| Ecosystem Type |
Unclassified
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Temperature Optimum |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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