PROJECT NAME
GOLD Project ID
Gp0011523  
Project Name
Dechloromonas agitata CKB  
Other Names
  
Legacy ER Project ID
3066  
Legacy GOLD ID
Gi10479  
NCBI BioProject Name
  
NCBI BioProject ID
  
NCBI BioProject Accession
  
NCBI Locus Tag
  
NCBI BioSample Accession
  
PI Ryan Melnyk
Added By Ryan Melnyk on 2011-06-28
Last Modified By Ioanna Pagani on 2011-08-03
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance Bioremediation
Sequencing Center Eureka genomics (USA)
Collaborating Institute
  
Funding Agency University of California, Berkeley (USA)
Project Description
Identifying genomic signatures of perchlorate reduction  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Comparative Genomics of Perchlorate Reduction
Analysis Projects Dechloromonas agitata CKB
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAii
Library Method (MIGS-28)
Paired End  
Number Of Reads
10399756  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011523
Organism Name
Dechloromonas agitata CKB  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Dechloromonas  
Genus Synonyms
  
Species
Dechloromonas agitata  
Subspecies
  
Species Synonyms
  
Strain
CKB  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700666  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2037  
Exemplar Name
Dechloromonas agitata  
Taxon DOI
10.1601/tx.2037  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 73030
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Rhodocyclales  
NCBI Family
Rhodocyclaceae  
NCBI Genus
Dechloromonas  
NCBI Species
Dechloromonas agitata  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Industrial production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30C  
Salinity
  
pH
7  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Sludge
Wastewater
Metabolisms Chlorate-reducer
Phenotypes
  
Energy Sources
  

 

 

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