PROJECT NAME
GOLD Project ID
Gp0011313  
Project Name
Haloplasma contractile SSD-17B  
Other Names
  
Legacy ER Project ID
2540  
Legacy GOLD ID
Gi09654  
NCBI BioProject Name Haloplasma contractile SSD-17B
NCBI BioProject ID 66977
NCBI BioProject Accession
PRJNA66977  
NCBI Locus Tag
HLPCO  
NCBI BioSample Accession
SAMN02472186  
PI Antunes, A
Added By Ioanna Pagani on 2011-06-21
Last Modified By Jyothi Mallajosyula on 2014-08-21
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center King Abdullah University of Science and Technology (Saudi Arabia)
Collaborating Institute
  
Funding Agency
  
Project Description
Haloplasma contractile was isolated from the sediment-brine interface of the Shaban Deep in the Red Sea. Shaban Deep is one of the best known deep-sea anoxic brine lakes of the Red Sea, which represent some of the most extreme and remote environments on Earth. H. contractile represents a new deeply branching phylogenetic lineage between the Firmicutes and the Mollicutes, and is the sole representative of the order Haloplasmatales. It also displays a series of unique features, most notably a complex morphology consisting of a central coccoid body and long cellular protrusions that undergo cyclic coiling and uncoiling.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(17):4551-2 Genome sequence of Haloplasma contractile, an unusual contractile bacterium from a deep-sea anoxic brine lake.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Haloplasma contractile SSD-17B
Analysis Projects Haloplasma contractile SSD-17B
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
32  
Chromosome Count
33  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011313
Organism Name
Haloplasma contractile SSD-17B  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
TENERICUTES  
Genus
Haloplasma  
Genus Synonyms
  
Species
Haloplasma contractile  
Subspecies
  
Species Synonyms
  
Strain
SSD-17B  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 18853  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13045  
Exemplar Name
Haloplasma contractile  
Taxon DOI
10.1601/tx.13045  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1033810
NCBI Kingdom
  
NCBI Phylum
  
NCBI Class
  
NCBI Order
Haloplasmatales  
NCBI Family
Haloplasmataceae  
NCBI Genus
Haloplasma  
NCBI Species
Haloplasma contractile  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Hypersaline  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
30-37C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Marine
Sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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