PROJECT NAME
GOLD Project ID
Gp0011162  
Project Name
Salinisphaera shabanensis E1L3A  
Other Names
  
Legacy ER Project ID
19636  
Legacy GOLD ID
Gi09655  
NCBI BioProject Name Salinisphaera shabanensis E1L3A
NCBI BioProject ID 66981
NCBI BioProject Accession
PRJNA66981  
NCBI Locus Tag
SSPSH  
NCBI BioSample Accession
SAMN02472183  
PI Antunes, A
Added By Ioanna Pagani on 2011-06-21
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Sequencing Center King Abdullah University of Science and Technology (Saudi Arabia)
Collaborating Institute
  
Funding Agency
  
Project Description
Salinisphaera shabanensis was isolated from the brine-seawater interface of the Shaban Deep, and represents a new, deeply branching lineage within the Gammaproteobacteria currently recognized as the order Salinisphaerales. The broad growth range and physiological flexibility of S. shabanensis suggests that it thrives in a broader environmental range that would include the brine-seawater interface, but might extend to the water column and the brine itself, constituting a possible advantage in such a harsh environment. Exposure to drastic changes in physico-chemical conditions observed in the brine-seawater interface would require the capability to cope with multiple stresses.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(17):4555-6 Genome sequence of Salinisphaera shabanensis, a gammaproteobacterium from the harsh, variable environment of the brine-seawater interface of the Shaban Deep in the Red Sea.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Salinisphaera shabanensis E1L3A
Analysis Projects Salinisphaera shabanensis E1L3A
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011162
Organism Name
Salinisphaera shabanensis E1L3A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Salinisphaera  
Genus Synonyms
  
Species
Salinisphaera shabanensis  
Subspecies
  
Species Synonyms
  
Strain
E1L3A  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 14853  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3455  
Exemplar Name
Salinisphaera shabanensis  
Taxon DOI
10.1601/tx.3455  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1033802
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Salinisphaerales  
NCBI Family
Salinisphaeraceae  
NCBI Genus
Salinisphaera  
NCBI Species
Salinisphaera shabanensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
45C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Marine
Saline water
Sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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