| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0011118
|
|
Project Name
|
Burkholderia cepacia GG4
|
|
Other Names
|
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Legacy ER Project ID
|
19645
|
|
Legacy GOLD ID
|
Gi09743, Gc02326
|
| NCBI BioProject Name | Burkholderia cepacia GG4 |
|
NCBI BioProject ID
|
66091 |
|
NCBI BioProject Accession
|
PRJNA66091 |
|
NCBI Locus Tag
|
GEM
|
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NCBI BioSample Accession
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|
| PI | |
| Added By |
Jakob Jansson
on 2011-06-22 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
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Project Status
|
Complete and Published
|
|
Project Relevance
|
Human Pathogen |
|
Sequencing Center
|
University of Malaya
(Malaysia)
|
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Collaborating Institute
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Funding Agency
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Project Description
|
B. cepacia is an important human pathogen which most often causes pneumonia in immunocompromised individuals with underlying lung disease. The goal of this project is to investigate the quorum sensing and quorum sensing-related genes, as well as the quorum quenching gene with the mechanisms involved.
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
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|
Database
|
|
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Genome Publications
|
Journal of bacteriology
194(22):6317
Complete genome sequence of Burkholderia sp. Strain GG4, a betaproteobacterium that reduces 3-oxo-N-acylhomoserine lactones and produces different N-acylhomoserine lactones.
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Other Publications
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| PROJECT COMPOSITION | |
| Study |
Burkholderia cepacia GG4 |
| Analysis Projects |
Burkholderia cepacia GG4 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
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Sequencing Comments
|
|
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Sequencing Technology
(MIGS-29)
|
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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|
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Vector
|
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| GC Percent |
67
|
| Chromosome Count |
2
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0011118 |
| Organism Name |
Burkholderia cepacia GG4
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-BETA
|
| Genus |
Burkholderia
|
| Genus Synonyms |
|
| Species |
Burkholderia cepacia
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
GG4
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
|
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ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1009846 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Betaproteobacteria
|
| NCBI Order |
Burkholderiales
|
| NCBI Family |
Burkholderiaceae
|
| NCBI Genus |
Burkholderia
|
| NCBI Species |
Burkholderia cepacia
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Soil
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| Synonym List |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
30 - 42
|
| Salinity |
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| pH |
|
| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Soil |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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